PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010624
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 374aa    MW: 41685.8 Da    PI: 6.8438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010624genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.3e-29135196159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldD+ynWrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs++dp+++eitY+g+H++ 
  DCAR_010624 135 LDDKYNWRKYGQKDILGAKYPRGYYRCTHRhaqGCLATKQVQRSDNDPTLFEITYRGRHTCA 196
                  58***************************99999*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.928130193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-28132196IPR003657WRKY domain
SuperFamilySSF1182904.45E-25134196IPR003657WRKY domain
SMARTSM007743.6E-40135197IPR003657WRKY domain
PfamPF031064.8E-26136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEQAYQQFET RDLINEVRQG KELAKQLQIH LNAPTSAHET REYLAHKIIV SFDKILNLLN  60
CGTSIVTGYE RVAGGREVRV TESPNSFSGS PRSEDSDQDF RSSDSKSDAS RKRKAMPRWT  120
KRVKIQPGTG IEGSLDDKYN WRKYGQKDIL GAKYPRGYYR CTHRHAQGCL ATKQVQRSDN  180
DPTLFEITYR GRHTCADQSS TIPPPPSERS DPSPSLTANV HDPQLHNQQR SSQEVLLNFK  240
TDLKVITEDL DSHDPVHVPT SFYFPPTSNN INNTSENYSL SHLYMLGDHN NFGSPPFVSP  300
ATSGSNYNLS VSPSHMSNFG GNFQALQASD NELNEIISVA NSATNSPTVG LNYQFGGVEF  360
NSSFTFDNSG FFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-131351931469WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001918.11e-124PREDICTED: probable WRKY transcription factor 30
TrEMBLB9I5401e-123B9I540_POPTR; Uncharacterized protein
STRINGPOPTR_0012s01380.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-48WRKY DNA-binding protein 30